PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.6767s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ARF
Protein Properties Length: 825aa    MW: 91526.6 Da    PI: 6.3324
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.6767s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.23.2e-23126227199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae+        ++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F  
  Cagra.6767s0001.1.p 126 FCKTLTASDTSTHGGFSVPRRAAEKVfppldyTLQPPA-QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI- 213
                          99*****************************9666655.49************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           ++++ +l+++++r+
  Cagra.6767s0001.1.p 214 -RNEKNQLFLGIRRA 227
                          .5688889***9997 PP

2Auxin_resp1102.5e-36252335183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aaha +t+s F+v+++Pras+seFv++++k+ ka+  +++svGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k
  Cagra.6767s0001.1.p 252 AAHASATNSCFTVFFHPRASPSEFVIQLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDTVRWPNSHWRSVK 335
                          799******************************986599******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.05E-47112255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-40119241IPR015300DNA-binding pseudobarrel domain
CDDcd100173.76E-21125221No hitNo description
SMARTSM010192.7E-23126228IPR003340B3 DNA binding domain
PfamPF023624.7E-21126227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.308126228IPR003340B3 DNA binding domain
PfamPF065079.1E-32252335IPR010525Auxin response factor
SuperFamilySSF542773.47E-7712792No hitNo description
PfamPF023098.9E-8715803IPR033389AUX/IAA domain
PROSITE profilePS5174522.8718802IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 825 aa     Download sequence    Send to blast
MKLSTSGLGQ QGHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV  60
DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP LTPEEQKETF VPIELGIPSK  120
QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYTLQ PPAQELIARD LHDVEWKFRH  180
IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV IFIRNEKNQL FLGIRRATRP QTIVPSSVLS  240
SDSMHIGLLA AAAHASATNS CFTVFFHPRA SPSEFVIQLS KYIKAVFHTR ISVGMRFRML  300
FETEESSVRR YMGTITGISD LDTVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT  360
FPMYPSLFPL RLKRPWHAGT SSLPDGRGEL GSGLTWLRGG GGDQQGLLPL NYPSVGLFPW  420
MQQRLDLTQM GTDNNQQYQA MLAAGLQNIG GGDPLRQQFV QLQEPHHQYL QQSASHNSEL  480
MLQQQQQQQQ QQQQASRHPM HAQVMSENIP QQNMRQEVSN HPTGQQLQQP DQNAYLNAFK  540
MQNGHLQQWQ HPEMASPSFM KSDFTDSSNK FATSATPMQQ NSASPASGDG SNLLNFSITG  600
QSVLPEQLTT EGWSPKASNT FSEPLSLPQA YPGKSLALEP GNPNLNPQNP SLFGVDPDSG  660
LFLPSTVPRF ASSSGDAEAS PMSLTDSGFQ NSLYGCMQDT THELLHGAGQ INPSNQTKNF  720
VKVYKSGSVG RSLDISRFSS YHELREELGK MFAIEGLLED PLRSGWQLVF VDKENDILLL  780
GDDPWESFVN NVWYIKILSP EDVQQMGDQG EGSAGSFPQN PTHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-155835640388Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0421960.0AF042196.1 Arabidopsis thaliana auxin response factor 8 (ARF8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282446.10.0hypothetical protein CARUB_v10004139mg
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLR0GF160.0R0GF16_9BRAS; Auxin response factor
STRINGAT5G37020.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8